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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
407
ChIP-seq
13
ATAC-seq
3
Hi-C
2
DNase-seq
1
pCHi-C
Assay category
407
DNA binding
Transcription
15
DNA accessibility
3
3D chromatin structure
Target of assay
352
transcription factor
85
recombinant protein
62
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
54
November, 2018
27
December, 2018
16
October, 2019
15
August, 2021
15
February, 2021
15
January, 2019
13
November, 2019
3
March, 2020
1
January, 2018
1
May, 2021
Available data
413
bigWig
405
bam
400
bed narrowPeak
362
fastq
351
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
17
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
1
tsv
Organism
426
Homo sapiens
Biosample type
837
tissue
426
cell line
374
primary cell
170
in vitro differentiated cells
3
stem cell
Organ
325
liver
55
blood
55
bodily fluid
25
pancreas
18
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
424
AMP
2
T1D
Genome assembly (visualization)
426
hg19
360
GRCh38
Lab
411
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
24
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
Transcription
BIOSAMPLE
ASSAY
426 results
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ChIP-seq
ATAC-seq
Hi-C
DNase-seq
pCHi-C
cell line
HepG2
322
1
1
1
GM12878
54
1
EndoC_BH1
13
3
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
1
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