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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
346
ChIP-seq
104
total RNA-seq
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
346
DNA binding
104
Transcription
2
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
309
transcription factor
88
recombinant protein
58
RNA binding protein
32
histone
32
histone modification
28
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
20
January, 2019
20
October, 2019
12
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
454
bigWig
453
bam
348
bed narrowPeak
323
bigBed narrowPeak
321
fastq
104
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
454
Homo sapiens
Biosample type
1661
tissue
487
primary cell
454
cell line
248
in vitro differentiated cells
3
stem cell
Organ
267
liver
56
artery
56
blood vessel
56
heart
56
vasculature
54
blood
54
bodily fluid
54
pancreas
48
epithelium
12
kidney
8
embryo
Project
450
AMP
4
T1D
Genome assembly (visualization)
517
hg19
454
GRCh38
Lab
454
AMP-T2D consortium
Audit category:
56
inconsistent ontology term
1
inconsistent control
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
454 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
261
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
EndoC_BH1
13
33
H1-hESC
8
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