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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
339
ChIP-seq
100
total RNA-seq
ATAC-seq
1
DNase-seq
1
Hi-C
1
WGBS
Assay category
339
DNA binding
100
Transcription
1
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
302
transcription factor
81
recombinant protein
58
RNA binding protein
32
histone
32
histone modification
28
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
20
January, 2019
12
November, 2019
8
August, 2021
8
October, 2019
5
March, 2020
5
May, 2021
Available data
442
bigWig
441
bam
340
bed narrowPeak
322
bigBed narrowPeak
321
fastq
100
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
442
Homo sapiens
Biosample type
1611
tissue
459
primary cell
442
cell line
248
in vitro differentiated cells
3
stem cell
Organ
267
liver
56
artery
56
blood vessel
56
heart
56
vasculature
54
blood
54
bodily fluid
54
pancreas
48
epithelium
kidney
8
embryo
Project
438
AMP
4
T1D
Genome assembly (visualization)
505
hg19
442
GRCh38
Lab
442
AMP-T2D consortium
Audit category:
46
inconsistent ontology term
1
inconsistent control
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
assay_title!
ATAC-seq
organ_slims!
kidney
BIOSAMPLE
ASSAY
442 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
261
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
EndoC_BH1
13
33
H1-hESC
8
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