Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
406
ChIP-seq
104
total RNA-seq
ATAC-seq
6
MeRIP-seq
6
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
406
DNA binding
106
Transcription
3
3D chromatin structure
2
DNA accessibility
Target of assay
293
transcription factor
76
control
73
recombinant protein
43
RNA binding protein
35
histone
35
histone modification
23
chromatin remodeller
18
broad histone mark
17
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
315
November, 2017
87
February, 2021
November, 2018
30
October, 2019
28
December, 2018
23
January, 2019
15
November, 2019
10
August, 2021
9
March, 2020
6
February, 2023
6
November, 2020
5
May, 2021
2
March, 2023
1
May, 2020
1
October, 2022
Available data
511
bam
448
bigWig
366
fastq
324
bed narrowPeak
299
bigBed narrowPeak
109
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bedpe bed3+
1
hdf5
1
hic
1
txt
Organism
534
Homo sapiens
Biosample type
2488
tissue
887
primary cell
538
cell line
352
in vitro differentiated cells
10
stem cell
Organ
323
liver
73
pancreas
60
epithelium
58
artery
58
blood vessel
58
heart
58
vasculature
45
blood
45
bodily fluid
17
kidney
8
embryo
1
mammary gland
Project
527
AMP
9
T1D
2
community
Genome assembly (visualization)
448
hg19
397
GRCh38
Lab
525
AMP-T2D consortium
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
72
inconsistent ontology term
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
1
inconsistent assembly
assay_title!
ATAC-seq
lab.title!
Bing Ren, UCSD
month_released!
November, 2018
BIOSAMPLE
ASSAY
538 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
HepG2
315
5
2
1
EndoC_BH1
15
33
6
3
1
2
2
1
smooth muscle cell of the coronary artery
6
52
GM12878
45
Panc1
13
1
1
+ See 12 more…
See all biosamples
Download