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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
Hi-C
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
whole genome sequencing assay
Assay category
DNA binding
111
Transcription
31
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
3
control
3
nucleotide modification
Date released
88
February, 2021
25
August, 2021
20
May, 2021
8
March, 2020
6
November, 2020
6
October, 2019
5
January, 2019
2
November, 2019
1
February, 2023
1
January, 2018
1
May, 2020
1
November, 2018
1
October, 2022
Available data
117
tsv
115
bam
108
bigWig
12
bed narrowPeak
6
fastq
2
bed bed3+
2
bigBed narrowPeak
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
txt
1
vcf
Organism
163
Homo sapiens
Biosample type
1759
tissue
358
primary cell
192
in vitro differentiated cells
165
cell line
5
stem cell
Organ
61
epithelium
60
artery
60
blood vessel
60
heart
60
pancreas
60
vasculature
21
liver
9
kidney
8
embryo
1
blood
1
bodily fluid
1
mammary gland
Project
165
AMP
7
T1D
2
community
Genome assembly (visualization)
118
hg19
115
GRCh38
Lab
144
AMP-T2D consortium
15
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
64
inconsistent ontology term
1
inconsistent replicate
assay_title!
Hi-C
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
165 results
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total RNA-seq
ATAC-seq
MeRIP-seq
pCHi-C
STARR-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
whole genome sequencing assay
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
31
19
6
2
1
HepG2
14
1
2
2
1
1
H1-hESC
8
HEK293T
2
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