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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
DNA binding
14
Transcription
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Date released
12
August, 2021
5
January, 2019
2
February, 2021
1
May, 2020
1
November, 2018
Available data
15
tsv
7
bam
6
bigWig
6
fastq
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
vcf
Organism
21
Homo sapiens
Biosample type
205
tissue
21
cell line
9
primary cell
Organ
63
epithelium
62
pancreas
60
artery
60
blood vessel
60
heart
60
vasculature
21
liver
9
kidney
8
embryo
1
blood
1
bodily fluid
1
mammary gland
Project
21
AMP
Genome assembly (visualization)
7
GRCh38
7
hg19
Lab
12
Bing Ren, UCSD
9
AMP-T2D consortium
Audit category:
1
inconsistent replicate
assay_title!
Hi-C
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
21 results
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total RNA-seq
STARR-seq
pCHi-C
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
14
2
2
1
1
1
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