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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
682
ChIP-seq
249
total RNA-seq
71
ATAC-seq
11
pCHi-C
8
Hi-C
6
MeRIP-seq
5
STARR-seq
4
Capture-C
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
2
HiChIP
2
single cell RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
71
DNA accessibility
Date released
21
May, 2021
13
February, 2021
12
August, 2021
12
February, 2023
6
November, 2019
4
October, 2019
2
March, 2020
1
January, 2018
Available data
31
bed narrowPeak
27
bam
15
bigWig
7
bed bedgraph
6
bed bed3
4
bed bed3+
3
txt
2
bigBed narrowPeak
1
tsv
Organism
71
Homo sapiens
Biosample type
260
tissue
200
primary cell
42
in vitro differentiated cells
29
cell line
Organ
19
epithelium
19
pancreas
17
connective tissue
8
artery
8
blood vessel
8
heart
8
vasculature
1
blood
1
bodily fluid
1
liver
Project
71
AMP
Genome assembly (visualization)
55
hg19
27
GRCh38
Lab
61
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
29
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
71 results
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ATAC-seq
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
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