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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
465
DNA binding
Target of assay
349
transcription factor
89
recombinant protein
76
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
60
November, 2018
27
December, 2018
23
October, 2019
18
January, 2019
13
November, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
465
bam
420
fastq
411
bigWig
392
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
Organism
465
Homo sapiens
Biosample type
722
tissue
465
cell line
242
primary cell
146
in vitro differentiated cells
3
stem cell
Organ
359
liver
60
blood
60
bodily fluid
28
pancreas
15
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
463
AMP
2
T1D
Genome assembly (visualization)
393
hg19
346
GRCh38
Lab
465
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
465 results
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ChIP-seq
cell line
HepG2
359
GM12878
60
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
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