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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1006
total RNA-seq
936
ChIP-seq
179
DNase-seq
168
ATAC-seq
17
WGBS
16
small RNA-seq
1
Hi-C
Assay category
1022
Transcription
936
DNA binding
347
DNA accessibility
17
DNA methylation
1
3D chromatin structure
Target of assay
526
histone modification
525
histone
402
transcription factor
267
narrow histone mark
258
broad histone mark
88
recombinant protein
85
RNA binding protein
30
chromatin remodeller
5
other context
5
other post-translational modification
3
control
Date released
544
February, 2021
274
November, 2017
181
October, 2019
163
June, 2019
162
May, 2020
158
August, 2017
116
July, 2018
92
May, 2019
79
November, 2018
72
August, 2021
64
April, 2019
61
July, 2019
52
November, 2019
45
October, 2018
43
May, 2021
40
May, 2024
36
December, 2017
35
February, 2023
30
December, 2018
26
January, 2019
14
March, 2020
14
October, 2017
12
May, 2023
6
April, 2018
2
March, 2019
2
September, 2017
Available data
2166
bam
2166
bigWig
1241
bed narrowPeak
1021
tsv
878
bigBed narrowPeak
601
fastq
236
bed broadPeak
221
bigBed broadPeak
206
bed bed3+
130
tagAlign
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
1
bed bed3
1
hdf5
1
tagAlign bed3+
Organism
2317
Homo sapiens
Biosample type
1859
tissue
536
primary cell
464
cell line
in vitro differentiated cells
3
stem cell
Organ
506
liver
480
connective tissue
441
pancreas
422
adipose tissue
255
heart
203
brain
177
kidney
169
blood vessel
169
vasculature
126
artery
96
limb
66
bone element
54
blood
54
bodily fluid
49
epithelium
42
musculature of body
31
nerve
18
ureter
16
spleen
8
embryo
8
skeleton
3
eye
1
pituitary gland
Project
2317
AMP
6
T1D
Genome assembly (visualization)
2323
GRCh38
2285
hg19
Lab
2205
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
61
inconsistent ontology term
28
inconsistent control
1
inconsistent replicate
Audit category:
30
missing controlled_by
Audit category:
28
inconsistent control read length
6
inconsistent control run_type
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
2323 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
Hi-C
tissue
adipose tissue
382
1
2
islet of Langerhans
266
25
1
22
liver
147
75
2
1
kidney
20
13
75
bone tissue
58
+ See 142 more…
cell line
HepG2
5
261
1
1
smooth muscle cell of the coronary artery
52
4
8
GM12878
54
EndoC_BH1
33
13
1
H1-hESC
8
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