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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
85
ChIP-seq
9
ATAC-seq
2
DNase-seq
1
Hi-C
Assay category
99
Transcription
85
DNA binding
11
DNA accessibility
1
3D chromatin structure
Target of assay
64
transcription factor
19
histone
19
histone modification
11
RNA binding protein
10
chromatin remodeller
10
narrow histone mark
9
broad histone mark
7
recombinant protein
Date released
91
February, 2021
27
December, 2018
20
October, 2019
15
January, 2019
13
November, 2019
12
November, 2018
8
August, 2021
5
March, 2020
5
May, 2021
Available data
195
bam
187
bigWig
99
tsv
96
bed narrowPeak
62
bigBed narrowPeak
54
fastq
5
tagAlign
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
196
Homo sapiens
Biosample type
1621
tissue
525
primary cell
in vitro differentiated cells
196
cell line
3
stem cell
Organ
liver
64
artery
64
blood vessel
64
heart
64
vasculature
55
pancreas
54
blood
54
bodily fluid
49
epithelium
12
kidney
8
embryo
Project
192
AMP
4
T1D
Genome assembly (visualization)
200
hg19
196
GRCh38
Lab
196
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
organ_slims!
liver
BIOSAMPLE
ASSAY
196 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
cell line
smooth muscle cell of the coronary artery
52
4
8
GM12878
54
EndoC_BH1
33
13
1
H1-hESC
8
Panc1
6
1
1
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