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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
129
DNA binding
104
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
108
transcription factor
30
RNA binding protein
22
recombinant protein
19
histone
19
histone modification
15
chromatin remodeller
10
narrow histone mark
9
broad histone mark
Date released
November, 2017
92
February, 2021
57
November, 2018
27
December, 2018
20
January, 2019
20
October, 2019
13
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
246
bam
237
bigWig
141
bed narrowPeak
106
bigBed narrowPeak
104
fastq
104
tsv
5
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
Organism
247
Homo sapiens
Biosample type
1802
tissue
530
primary cell
265
in vitro differentiated cells
247
cell line
3
stem cell
Organ
64
artery
64
blood vessel
64
heart
64
vasculature
55
pancreas
54
blood
54
bodily fluid
51
liver
49
epithelium
12
kidney
8
embryo
Project
243
AMP
4
T1D
Genome assembly (visualization)
264
hg19
247
GRCh38
Lab
247
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
1
inconsistent assembly
month_released!
November, 2017
BIOSAMPLE
ASSAY
247 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
HepG2
44
5
1
1
EndoC_BH1
13
33
1
H1-hESC
8
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