Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
261
ChIP-seq
5
total RNA-seq
1
ATAC-seq
1
WGBS
Assay category
261
DNA binding
5
Transcription
1
DNA accessibility
1
DNA methylation
Target of assay
245
transcription factor
81
recombinant protein
47
RNA binding protein
18
chromatin remodeller
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
45
November, 2018
5
January, 2019
1
February, 2021
Available data
268
bam
267
bigWig
267
fastq
262
bed narrowPeak
261
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
9
tagAlign
5
tsv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
268
Homo sapiens
Biosample type
268
cell line
238
tissue
14
in vitro differentiated cells
11
primary cell
Organ
268
liver
64
artery
64
blood vessel
64
heart
64
vasculature
55
pancreas
54
blood
54
bodily fluid
49
epithelium
12
kidney
8
embryo
Project
268
AMP
Genome assembly (visualization)
330
hg19
268
GRCh38
Lab
268
AMP-T2D consortium
Audit category:
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
BIOSAMPLE
ASSAY
268 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
cell line
HepG2
261
5
1
1
Download