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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
352
ChIP-seq
2
DNase-seq
Assay category
352
DNA binding
2
DNA accessibility
Target of assay
327
transcription factor
81
recombinant protein
61
RNA binding protein
29
chromatin remodeller
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
56
November, 2018
26
December, 2018
15
January, 2019
8
October, 2019
Available data
581
bam
521
bigWig
426
fastq
403
bed narrowPeak
354
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
354
Homo sapiens
Biosample type
534
tissue
354
cell line
109
primary cell
17
in vitro differentiated cells
Organ
293
liver
53
blood
53
bodily fluid
7
pancreas
1
epithelium
1
kidney
Project
354
AMP
Genome assembly (visualization)
350
hg19
322
GRCh38
Lab
354
AMP-T2D consortium
Audit category:
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
354 results
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ChIP-seq
DNase-seq
cell line
HepG2
293
GM12878
53
Panc1
6
1
glomerular visceral epithelial cell
1
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