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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
total RNA-seq
3
pCHi-C
Assay category
77
Transcription
Date released
52
February, 2021
17
August, 2021
5
January, 2019
4
March, 2020
1
May, 2020
1
October, 2019
Available data
520
bam
464
bigWig
427
fastq
383
bed narrowPeak
355
bigBed narrowPeak
80
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
80
Homo sapiens
Biosample type
1073
tissue
253
primary cell
80
cell line
41
in vitro differentiated cells
3
stem cell
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
15
liver
8
embryo
1
epithelium
1
kidney
1
mammary gland
Project
80
AMP
Genome assembly (visualization)
68
GRCh38
68
hg19
Lab
71
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
80 results
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total RNA-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
HepG2
14
1
H1-hESC
8
early embryonic cell
2
MCF-7
1
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