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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
total RNA-seq
18
ATAC-seq
12
ChIP-seq
6
MeRIP-seq
2
Capture-C
2
pCHi-C
1
STARR-seq
Assay category
35
Transcription
18
DNA accessibility
12
DNA binding
Target of assay
7
recombinant protein
7
transcription factor
6
control
3
nucleotide modification
2
histone
2
histone modification
2
narrow histone mark
Date released
26
February, 2021
21
May, 2021
November, 2019
13
October, 2019
7
March, 2020
6
November, 2020
3
August, 2021
Available data
47
bam
46
bigWig
38
tsv
9
bed narrowPeak
Organism
76
Homo sapiens
Biosample type
110
in vitro differentiated cells
90
tissue
76
cell line
54
primary cell
1
stem cell
Organ
60
epithelium
60
pancreas
15
kidney
Project
72
AMP
4
T1D
Genome assembly (visualization)
46
hg19
44
GRCh38
Lab
69
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
76
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
month_released!
November, 2019
BIOSAMPLE
ASSAY
76 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
pCHi-C
STARR-seq
cell line
EndoC_BH1
32
18
2
6
2
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
RCC 7860 VHL
1
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