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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
total RNA-seq
25
ChIP-seq
19
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
pCHi-C
1
Hi-C
1
STARR-seq
Assay category
36
Transcription
25
DNA binding
19
DNA accessibility
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
8
control
8
transcription factor
7
recombinant protein
6
broad histone mark
6
narrow histone mark
3
nucleotide modification
1
RNA binding protein
Date released
26
February, 2021
21
May, 2021
16
November, 2019
13
October, 2019
7
March, 2020
6
November, 2020
3
August, 2021
Available data
62
bam
58
bigWig
39
tsv
21
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
92
Homo sapiens
Biosample type
115
in vitro differentiated cells
92
cell line
91
tissue
54
primary cell
1
stem cell
Organ
76
epithelium
76
pancreas
15
kidney
Project
88
AMP
4
T1D
Genome assembly (visualization)
60
hg19
57
GRCh38
Lab
85
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
92
inconsistent ontology term
inconsistent control
1
inconsistent replicate
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
92 results
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total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
pCHi-C
Hi-C
STARR-seq
cell line
EndoC_BH1
33
15
19
6
2
1
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
RCC 7860 VHL
1
Synthesized DNA
1
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