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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
368
ChIP-seq
10
ATAC-seq
2
DNase-seq
Assay category
368
DNA binding
12
DNA accessibility
Target of assay
337
transcription factor
87
recombinant protein
57
RNA binding protein
26
histone
26
histone modification
19
chromatin remodeller
14
narrow histone mark
12
broad histone mark
2
other context
2
other post-translational modification
Date released
230
November, 2017
51
November, 2018
27
December, 2018
15
January, 2019
15
October, 2019
14
August, 2021
14
February, 2021
12
November, 2019
1
March, 2020
1
May, 2021
Available data
556
bam
496
bigWig
401
fastq
380
bed narrowPeak
331
bigBed narrowPeak
119
tsv
46
bed broadPeak
46
bigBed broadPeak
9
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
380
Homo sapiens
Biosample type
938
tissue
380
cell line
290
primary cell
115
in vitro differentiated cells
Organ
284
liver
54
blood
54
bodily fluid
21
pancreas
15
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
378
AMP
2
T1D
Genome assembly (visualization)
376
hg19
336
GRCh38
Lab
366
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
21
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
380 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
283
1
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
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