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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
402
ChIP-seq
111
total RNA-seq
29
ATAC-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
MeRIP-seq
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
whole genome sequencing assay
Assay category
402
DNA binding
111
Transcription
31
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
361
transcription factor
89
recombinant protein
control
65
RNA binding protein
36
histone
36
histone modification
30
chromatin remodeller
19
broad histone mark
17
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
259
November, 2017
93
February, 2021
58
November, 2018
40
August, 2021
28
December, 2018
21
October, 2019
20
January, 2019
20
May, 2021
14
November, 2019
8
March, 2020
3
November, 2020
1
February, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
505
bigWig
502
bam
402
bed narrowPeak
365
fastq
355
bigBed narrowPeak
117
tsv
59
bed broadPeak
59
bigBed broadPeak
16
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
566
Homo sapiens
Biosample type
2453
tissue
568
cell line
524
primary cell
357
in vitro differentiated cells
7
stem cell
Organ
341
liver
77
pancreas
70
epithelium
64
artery
64
blood vessel
64
heart
64
vasculature
55
blood
55
bodily fluid
16
kidney
8
embryo
1
mammary gland
Project
568
AMP
9
T1D
2
community
Genome assembly (visualization)
513
hg19
460
GRCh38
Lab
535
AMP-T2D consortium
30
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
80
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
target.investigated_as!
control
BIOSAMPLE
ASSAY
568 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
STARR-seq
Hi-C
MeRIP-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
whole genome sequencing assay
cell line
HepG2
318
14
1
2
2
2
1
1
EndoC_BH1
11
31
19
1
3
2
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
1
Panc1
7
1
1
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