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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
249
total RNA-seq
2
single cell RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
682
DNA binding
253
Transcription
74
DNA accessibility
8
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Date released
100
February, 2021
88
May, 2021
24
August, 2021
15
February, 2018
6
March, 2020
6
October, 2019
5
January, 2019
4
February, 2023
2
December, 2019
2
March, 2023
1
November, 2019
Available data
242
tsv
231
bam
231
bigWig
20
fastq
Organism
251
Homo sapiens
Biosample type
1227
tissue
436
primary cell
138
in vitro differentiated cells
115
cell line
2
stem cell
Organ
53
heart
52
artery
52
blood vessel
52
vasculature
36
epithelium
33
pancreas
14
embryo
14
liver
9
connective tissue
4
kidney
Project
249
AMP
2
T1D
2
community
Genome assembly (visualization)
231
GRCh38
231
hg19
Lab
237
AMP-T2D consortium
9
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
127
inconsistent ontology term
2
audit script error
BIOSAMPLE
ASSAY
253 results
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total RNA-seq
single cell RNA-seq
shRNA RNA-seq
siRNA RNA-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
induced pluripotent stem cell
9
embryonic stem cell
7
neural progenitor cell
7
+ See 21 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
H1-hESC
8
EndoC-BH1
1
1
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