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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
4
ATAC-seq
2
Capture-C
1
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
19
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
8
histone
8
histone modification
6
transcription factor
5
control
4
broad histone mark
4
narrow histone mark
Date released
12
December, 2017
7
August, 2017
4
February, 2023
2
August, 2021
2
October, 2019
1
February, 2021
Available data
873
bam
781
bigWig
568
fastq
536
bed narrowPeak
372
bigBed narrowPeak
250
tsv
60
bed broadPeak
60
bigBed broadPeak
60
tagAlign
28
bed bed3+
9
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
4
txt
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
28
Homo sapiens
Biosample type
205
tissue
37
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
13
connective tissue
3
embryo
2
pancreas
1
liver
Project
28
AMP
Genome assembly (visualization)
28
hg19
21
GRCh38
Lab
26
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
8
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
ATAC-seq
Capture-C
DNase-seq
Hi-C
pCHi-C
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 3 more…
cell line
Panc1
1
1
HepG2
1
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