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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
231
total RNA-seq
15
ATAC-seq
4
GRO-seq
3
DNase-seq
1
Hi-C
1
WGBS
Assay category
526
DNA binding
231
Transcription
18
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
393
transcription factor
115
histone
115
histone modification
88
recombinant protein
69
RNA binding protein
59
narrow histone mark
55
broad histone mark
33
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
105
February, 2021
94
May, 2021
57
November, 2018
48
August, 2017
44
August, 2021
34
December, 2017
31
February, 2018
27
December, 2018
24
October, 2019
20
January, 2019
12
November, 2019
9
March, 2020
5
January, 2018
3
February, 2023
Available data
873
bam
781
bigWig
568
fastq
536
bed narrowPeak
372
bigBed narrowPeak
250
tsv
60
bed broadPeak
60
bigBed broadPeak
60
tagAlign
28
bed bed3+
9
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
4
txt
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
781
Homo sapiens
Biosample type
1732
tissue
613
primary cell
522
cell line
259
in vitro differentiated cells
3
stem cell
Organ
346
liver
70
epithelium
58
pancreas
57
connective tissue
57
heart
56
artery
56
blood vessel
56
vasculature
55
blood
55
bodily fluid
29
embryo
12
kidney
Project
777
AMP
4
T1D
Genome assembly (visualization)
771
hg19
697
GRCh38
4
hg18
Lab
757
AMP-T2D consortium
14
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
151
inconsistent ontology term
1
inconsistent control
Audit category:
17
missing controlled_by
Audit category:
43
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
BIOSAMPLE
ASSAY
781 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
EndoC_BH1
13
33
2
H1-hESC
8
+ See 7 more…
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
47
4
3
1
neural progenitor cell
13
7
cardiac precursors (cardiac muscle cell)
19
pancreatic endoderm
12
4
1
+ See 26 more…
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