Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
763
ChIP-seq
229
ATAC-seq
56
snATAC-seq
48
WGBS
33
DNase-seq
23
pCHi-C
14
Hi-C
10
RRBS
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
whole genome sequencing assay
Assay category
763
DNA binding
Transcription
319
DNA accessibility
59
DNA methylation
14
3D chromatin structure
1
DNA sequencing
Target of assay
371
transcription factor
275
histone
275
histone modification
141
broad histone mark
134
narrow histone mark
115
control
89
recombinant protein
75
RNA binding protein
31
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
324
November, 2017
168
May, 2021
101
May, 2020
101
May, 2022
61
November, 2018
59
August, 2017
58
October, 2019
55
June, 2019
53
February, 2021
46
September, 2018
31
August, 2021
28
December, 2018
18
February, 2023
18
January, 2019
15
November, 2019
13
July, 2019
8
January, 2021
8
March, 2020
8
November, 2020
7
August, 2020
5
May, 2019
5
September, 2017
4
October, 2022
3
September, 2020
1
January, 2018
1
March, 2023
Available data
835
bam
777
bigWig
699
bed narrowPeak
583
fastq
464
bigBed narrowPeak
120
tagAlign
108
bed broadPeak
108
bigBed broadPeak
101
zippedFastqFolder
38
bed bed3+
24
tsv
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
1
txt
1
vcf
Organism
1197
Homo sapiens
Biosample type
1510
tissue
652
primary cell
547
cell line
256
in vitro differentiated cells
8
stem cell
Organ
396
liver
288
epithelium
250
pancreas
69
blood
69
bodily fluid
49
vasculature
45
kidney
43
blood vessel
24
connective tissue
23
heart
22
vein
18
brain
14
artery
12
musculature of body
5
eye
1
bone element
1
bone marrow
1
mammary gland
Project
936
AMP
147
HPAP
115
T1D
1
ITG
Genome assembly (visualization)
800
hg19
644
GRCh38
Lab
874
AMP-T2D consortium
147
Klaus Kaestner, Upenn
146
Kyle Gaulton, UCSD
25
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
1
ITG
Audit category:
99
inconsistent ontology term
31
audit script error
1
inconsistent control
1
inconsistent replicate
Audit category:
57
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
assay_slims!
Transcription
BIOSAMPLE
ASSAY
1199 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
DNAme array
FAIRE-seq
MPRA
whole genome sequencing assay
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
+ See 71 more…
cell line
HepG2
378
1
1
2
2
2
1
GM12878
60
1
EndoC_BH1
15
19
1
6
3
2
2
1
Panc1
13
1
1
smooth muscle cell of the coronary artery
6
8
+ See 11 more…
See all biosamples
Download