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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
763
ChIP-seq
360
total RNA-seq
229
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
48
WGBS
33
DNase-seq
23
pCHi-C
14
Hi-C
10
RRBS
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
763
DNA binding
Target of assay
371
transcription factor
275
histone
275
histone modification
141
broad histone mark
134
narrow histone mark
112
control
89
recombinant protein
75
RNA binding protein
31
chromatin remodeller
2
other context
2
other post-translational modification
Date released
324
November, 2017
122
May, 2021
60
November, 2018
53
August, 2017
47
October, 2019
32
September, 2018
31
June, 2019
27
December, 2018
22
August, 2021
18
January, 2019
13
November, 2019
8
February, 2021
5
May, 2019
1
March, 2020
Available data
707
bam
658
bigWig
618
bed narrowPeak
514
fastq
410
bigBed narrowPeak
120
tagAlign
79
bed broadPeak
79
bigBed broadPeak
3
bed bed3+
3
tar
Organism
763
Homo sapiens
Biosample type
867
tissue
484
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
382
liver
107
epithelium
98
pancreas
60
blood
60
bodily fluid
29
vasculature
26
blood vessel
25
kidney
17
vein
12
connective tissue
11
heart
10
musculature of body
9
brain
6
artery
3
eye
Project
677
AMP
86
T1D
Genome assembly (visualization)
654
hg19
553
GRCh38
Lab
628
AMP-T2D consortium
117
Kyle Gaulton, UCSD
18
Bing Ren, UCSD
Audit category:
50
inconsistent ontology term
1
inconsistent control
Audit category:
57
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
BIOSAMPLE
ASSAY
763 results
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Clear Filters
ChIP-seq
cell line
HepG2
378
GM12878
60
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
+ See 4 more…
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
+ See 18 more…
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