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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
763
ChIP-seq
360
total RNA-seq
229
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
48
WGBS
33
DNase-seq
23
pCHi-C
14
Hi-C
10
RRBS
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
16
May, 2021
4
March, 2020
2
February, 2021
1
May, 2020
Available data
5
tsv
2
bed bed3+
1
bam
Organism
23
Homo sapiens
Biosample type
25
tissue
17
primary cell
6
cell line
5
in vitro differentiated cells
4
stem cell
Organ
2
connective tissue
2
kidney
2
liver
1
bone element
1
bone marrow
1
mammary gland
Project
16
T1D
7
AMP
Genome assembly (visualization)
2
hg19
Lab
16
Kyle Gaulton, UCSD
7
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
BIOSAMPLE
ASSAY
23 results
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pCHi-C
primary cell
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
+ See 11 more…
cell line
HepG2
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
See all biosamples
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