Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
641
ChIP-seq
301
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
48
WGBS
33
DNase-seq
14
Hi-C
10
RRBS
7
pCHi-C
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
641
DNA binding
492
Transcription
290
DNA accessibility
58
DNA methylation
14
3D chromatin structure
1
DNA sequencing
Target of assay
371
transcription factor
156
histone
156
histone modification
115
control
89
recombinant protein
81
narrow histone mark
75
RNA binding protein
75
broad histone mark
31
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
324
November, 2017
May, 2021
148
May, 2020
144
February, 2021
134
May, 2022
94
February, 2023
73
September, 2018
64
October, 2019
62
November, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
August, 2021
48
July, 2018
43
April, 2018
31
July, 2019
28
December, 2018
23
January, 2019
16
November, 2019
12
March, 2020
12
November, 2020
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
October, 2022
3
August, 2018
3
June, 2018
3
March, 2023
2
October, 2018
1
January, 2018
Available data
1037
bam
959
bigWig
836
fastq
571
bed narrowPeak
464
bigBed narrowPeak
333
tsv
153
zippedFastqFolder
108
bed broadPeak
108
bigBed broadPeak
38
bed bed3+
36
tagAlign
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
2
csv
1
txt
1
vcf
Organism
1519
Homo sapiens
Biosample type
2697
tissue
882
primary cell
641
cell line
262
in vitro differentiated cells
10
stem cell
Organ
464
epithelium
417
pancreas
415
liver
103
vasculature
97
blood vessel
79
heart
69
blood
69
bodily fluid
68
artery
55
kidney
38
connective tissue
22
vein
21
brain
14
musculature of body
8
embryo
5
eye
2
adipose tissue
1
mammary gland
1
pericardium
Project
1135
AMP
324
HPAP
61
T1D
2
community
1
ITG
Genome assembly (visualization)
969
hg19
846
GRCh38
Lab
1098
AMP-T2D consortium
324
Klaus Kaestner, Upenn
58
Kyle Gaulton, UCSD
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
1
ITG
Audit category:
124
inconsistent ontology term
31
audit script error
1
inconsistent control
1
inconsistent replicate
Audit category:
57
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
month_released!
May, 2021
BIOSAMPLE
ASSAY
1523 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
pCHi-C
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
MPRA
shRNA RNA-seq
...and 2 more
primary cell
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
exocrine cell
39
pancreatic acinar cell
8
4
9
12
1
+ See 86 more…
cell line
HepG2
378
14
1
1
2
2
2
smooth muscle cell of the coronary artery
6
52
8
EndoC_BH1
14
29
3
1
6
3
2
2
1
GM12878
60
1
Panc1
13
1
1
+ See 14 more…
See all biosamples
Download