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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
346
ChIP-seq
104
total RNA-seq
10
ATAC-seq
1
DNase-seq
1
WGBS
Assay category
346
DNA binding
104
Transcription
11
DNA accessibility
1
DNA methylation
Target of assay
309
transcription factor
88
recombinant protein
58
RNA binding protein
32
histone
32
histone modification
28
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
92
February, 2021
57
November, 2018
27
December, 2018
20
January, 2019
18
October, 2019
13
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
463
bam
454
bigWig
358
bed narrowPeak
323
bigBed narrowPeak
321
fastq
104
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
462
Homo sapiens
Biosample type
1615
tissue
506
primary cell
462
cell line
246
in vitro differentiated cells
Organ
268
liver
64
artery
64
blood vessel
64
heart
64
vasculature
54
blood
54
bodily fluid
53
pancreas
49
epithelium
12
kidney
8
embryo
Project
458
AMP
4
T1D
Genome assembly (visualization)
527
hg19
462
GRCh38
Lab
462
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
files.file_type!
bed bed3+
txt
BIOSAMPLE
ASSAY
462 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
261
5
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
EndoC_BH1
13
33
1
H1-hESC
8
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