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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
374
ChIP-seq
113
total RNA-seq
29
ATAC-seq
5
STARR-seq
5
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
3
MeRIP-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
374
DNA binding
115
Transcription
30
DNA accessibility
3
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
361
transcription factor
89
recombinant protein
control
65
RNA binding protein
38
histone
38
histone modification
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
244
November, 2017
92
February, 2021
51
November, 2018
40
August, 2021
26
December, 2018
21
May, 2021
19
October, 2019
14
January, 2019
14
November, 2019
11
March, 2020
6
February, 2023
3
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
479
bigWig
476
bam
374
bed narrowPeak
335
fastq
325
bigBed narrowPeak
119
tsv
55
bed broadPeak
55
bigBed broadPeak
16
tagAlign
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
542
Homo sapiens
Biosample type
2386
tissue
1015
primary cell
546
cell line
334
in vitro differentiated cells
7
stem cell
Organ
320
liver
79
pancreas
74
epithelium
64
artery
64
blood vessel
64
heart
64
vasculature
45
blood
45
bodily fluid
16
kidney
8
embryo
1
mammary gland
Project
535
AMP
9
T1D
2
community
Genome assembly (visualization)
484
hg19
434
GRCh38
Lab
506
AMP-T2D consortium
30
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
84
inconsistent ontology term
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
15
inconsistent control read length
files.file_type!
bed bed3+
target.investigated_as!
chromatin remodeller
control
BIOSAMPLE
ASSAY
546 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
MeRIP-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
298
14
1
2
1
2
1
1
EndoC_BH1
13
33
19
3
1
3
2
2
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
44
1
H1-hESC
8
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