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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
302
ChIP-seq
104
total RNA-seq
10
ATAC-seq
1
DNase-seq
1
Hi-C
1
WGBS
Assay category
302
DNA binding
104
Transcription
11
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
277
transcription factor
88
recombinant protein
55
RNA binding protein
24
chromatin remodeller
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
1
other context
1
other post-translational modification
Date released
173
November, 2017
92
February, 2021
57
November, 2018
27
December, 2018
20
January, 2019
19
October, 2019
13
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
463
bam
454
bigWig
358
bed narrowPeak
323
bigBed narrowPeak
321
fastq
104
tsv
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
419
Homo sapiens
Biosample type
1628
tissue
491
primary cell
419
cell line
264
in vitro differentiated cells
3
stem cell
Organ
224
liver
64
artery
64
blood vessel
64
heart
64
vasculature
54
blood
54
bodily fluid
54
pancreas
49
epithelium
12
kidney
8
embryo
Project
415
AMP
4
T1D
Genome assembly (visualization)
471
hg19
419
GRCh38
Lab
419
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
11
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
419 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
217
5
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
EndoC_BH1
13
33
1
H1-hESC
8
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