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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
total RNA-seq
19
ChIP-seq
3
ATAC-seq
1
Hi-C
1
WGBS
Assay category
104
Transcription
19
DNA binding
3
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
13
control
4
transcription factor
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
Date released
78
February, 2021
19
November, 2017
8
August, 2021
6
March, 2020
5
January, 2019
5
October, 2019
4
May, 2021
1
January, 2018
1
November, 2018
1
November, 2019
Available data
582
bam
522
bigWig
427
fastq
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
128
Homo sapiens
Biosample type
962
tissue
334
primary cell
144
in vitro differentiated cells
128
cell line
1
stem cell
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
36
epithelium
36
pancreas
25
liver
8
embryo
4
kidney
1
blood
1
bodily fluid
Project
126
AMP
2
T1D
Genome assembly (visualization)
127
hg19
106
GRCh38
Lab
128
AMP-T2D consortium
Audit category:
38
inconsistent ontology term
Audit category:
2
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
128 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
WGBS
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
2
HepG2
5
19
1
H1-hESC
8
early embryonic cell
2
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