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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
2
Hi-C
Assay category
6
DNA binding
2
3D chromatin structure
Target of assay
4
control
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
Date released
3
February, 2021
3
November, 2017
1
August, 2021
1
November, 2019
Available data
582
bam
522
bigWig
427
fastq
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
8
Homo sapiens
Biosample type
104
tissue
26
in vitro differentiated cells
8
cell line
8
primary cell
Organ
4
liver
2
artery
2
blood vessel
2
heart
2
vasculature
1
epithelium
1
pancreas
Project
8
AMP
Genome assembly (visualization)
5
hg19
Lab
7
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
8 results
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ChIP-seq
Hi-C
cell line
HepG2
3
1
smooth muscle cell of the coronary artery
2
EndoC_BH1
1
iPSC derived cell line
1
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