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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
28
ChIP-seq
19
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
33
Transcription
28
DNA binding
19
DNA accessibility
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
10
broad histone mark
9
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
15
November, 2019
13
October, 2019
6
November, 2020
5
March, 2020
2
August, 2021
1
February, 2023
Available data
63
bam
55
bigWig
34
tsv
21
bed narrowPeak
7
bigBed narrowPeak
1
bed bed3+
1
bed broadPeak
bigBed broadPeak
Organism
88
Homo sapiens
Biosample type
495
tissue
343
primary cell
89
cell line
3
in vitro differentiated cells
Organ
341
liver
89
pancreas
78
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
85
AMP
4
T1D
Genome assembly (visualization)
55
hg19
53
GRCh38
Lab
83
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
75
inconsistent ontology term
files.file_type!
bigBed broadPeak
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
89 results
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total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
cell line
EndoC_BH1
33
15
19
6
2
1
Panc1
13
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