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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
361
ChIP-seq
5
total RNA-seq
1
Hi-C
1
WGBS
Assay category
361
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
293
transcription factor
82
recombinant protein
62
control
59
RNA binding protein
26
chromatin remodeller
2
histone
2
histone modification
2
narrow histone mark
1
other context
other post-translational modification
Date released
256
November, 2017
61
November, 2018
28
December, 2018
23
January, 2019
Available data
580
bam
520
bigWig
425
fastq
402
bed narrowPeak
353
bigBed narrowPeak
119
tsv
58
bed broadPeak
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
368
Homo sapiens
Biosample type
389
primary cell
368
cell line
365
tissue
140
in vitro differentiated cells
4
stem cell
Organ
308
liver
60
blood
60
bodily fluid
Project
368
AMP
Genome assembly (visualization)
308
hg19
276
GRCh38
Lab
368
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed broadPeak
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
368 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
301
5
1
1
GM12878
60
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