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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
total RNA-seq
109
ChIP-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
109
DNA binding
Target of assay
transcription factor
89
recombinant protein
80
control
61
RNA binding protein
26
chromatin remodeller
24
histone
24
histone modification
13
narrow histone mark
11
broad histone mark
1
other context
1
other post-translational modification
Date released
60
November, 2017
16
October, 2019
12
November, 2019
7
August, 2021
4
January, 2019
3
February, 2021
3
November, 2018
2
December, 2018
1
March, 2020
1
May, 2021
Available data
116
bam
83
fastq
55
bigWig
40
bed narrowPeak
25
bigBed narrowPeak
15
tagAlign
14
bed broadPeak
bigBed broadPeak
Organism
109
Homo sapiens
Biosample type
813
tissue
253
primary cell
149
in vitro differentiated cells
109
cell line
3
stem cell
Organ
67
liver
27
pancreas
14
epithelium
9
blood
9
bodily fluid
3
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
107
AMP
2
T1D
Genome assembly (visualization)
41
hg19
25
GRCh38
Lab
102
AMP-T2D consortium
7
Bing Ren, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigBed broadPeak
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
cell line
HepG2
67
EndoC_BH1
14
Panc1
13
GM12878
9
smooth muscle cell of the coronary artery
2
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