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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
5
total RNA-seq
1
Hi-C
1
WGBS
Assay category
69
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
transcription factor
82
recombinant protein
62
control
59
RNA binding protein
26
chromatin remodeller
2
histone
2
histone modification
2
narrow histone mark
1
other context
1
other post-translational modification
Date released
60
November, 2017
9
January, 2019
4
November, 2018
3
December, 2018
Available data
233
bam
166
bigWig
119
tsv
90
fastq
52
bed narrowPeak
27
bigBed narrowPeak
15
bed broadPeak
bigBed broadPeak
15
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
76
Homo sapiens
Biosample type
389
primary cell
289
tissue
107
in vitro differentiated cells
76
cell line
4
stem cell
Organ
67
liver
9
blood
9
bodily fluid
Project
76
AMP
Genome assembly (visualization)
25
hg19
13
GRCh38
Lab
76
AMP-T2D consortium
Audit category:
1
missing controlled_by
files.file_type!
bigBed broadPeak
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
76 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
60
5
1
1
GM12878
9
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