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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
Assay category
37
DNA binding
Target of assay
317
transcription factor
89
recombinant protein
83
control
61
RNA binding protein
26
chromatin remodeller
24
histone
24
histone modification
13
narrow histone mark
11
broad histone mark
3
nucleotide modification
1
other context
1
other post-translational modification
Date released
11
November, 2017
7
November, 2018
6
January, 2019
6
November, 2019
4
October, 2019
2
December, 2018
1
August, 2021
Available data
48
bam
48
bigWig
47
bed narrowPeak
40
bigBed narrowPeak
38
fastq
12
bed broadPeak
bigBed broadPeak
6
tagAlign
Organism
37
Homo sapiens
Biosample type
305
tissue
114
primary cell
59
in vitro differentiated cells
37
cell line
1
stem cell
Organ
17
liver
10
blood
10
bodily fluid
10
pancreas
6
epithelium
Project
37
AMP
Genome assembly (visualization)
36
hg19
33
GRCh38
Lab
36
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
1
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
10
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
cell line
HepG2
17
GM12878
10
EndoC_BH1
6
Panc1
4
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