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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
123
DNA binding
115
Transcription
29
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
83
control
33
transcription factor
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
recombinant protein
4
RNA binding protein
3
nucleotide modification
Date released
96
February, 2021
66
November, 2017
44
August, 2021
21
May, 2021
16
November, 2019
15
October, 2019
11
March, 2020
8
January, 2019
6
February, 2023
6
November, 2020
4
November, 2018
2
March, 2023
1
December, 2018
1
January, 2018
1
May, 2020
1
October, 2022
Available data
493
bam
434
bigWig
345
fastq
316
bed narrowPeak
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
295
Homo sapiens
Biosample type
2176
tissue
979
primary cell
377
in vitro differentiated cells
299
cell line
10
stem cell
Organ
107
liver
85
pancreas
78
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
11
kidney
8
embryo
7
blood
7
bodily fluid
1
mammary gland
Project
288
AMP
9
T1D
2
community
Genome assembly (visualization)
172
hg19
134
GRCh38
Lab
252
AMP-T2D consortium
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
85
inconsistent ontology term
1
inconsistent replicate
Audit category:
2
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed narrowPeak
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
299 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
pCHi-C
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
84
14
1
2
2
2
1
1
EndoC_BH1
15
33
19
6
1
3
2
2
1
smooth muscle cell of the coronary artery
6
52
8
H1-hESC
8
Panc1
7
1
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