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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ATAC-seq
9
total RNA-seq
6
ChIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
3
MeRIP-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
26
DNA accessibility
11
Transcription
6
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
control
5
transcription factor
3
nucleotide modification
2
RNA binding protein
1
broad histone mark
1
histone
1
histone modification
1
recombinant protein
Date released
18
August, 2021
16
May, 2021
10
February, 2021
6
February, 2023
4
March, 2020
4
November, 2017
3
November, 2020
2
March, 2023
2
November, 2019
1
December, 2018
1
May, 2020
1
November, 2018
1
October, 2019
1
October, 2022
Available data
bigWig
506
bam
404
bed narrowPeak
365
fastq
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
16
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
66
Homo sapiens
Biosample type
818
tissue
450
primary cell
98
in vitro differentiated cells
70
cell line
6
stem cell
Organ
25
pancreas
24
epithelium
22
liver
8
artery
8
blood vessel
8
heart
8
vasculature
4
kidney
1
mammary gland
Project
63
AMP
5
T1D
2
community
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
44
AMP-T2D consortium
16
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
26
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bigWig
target.investigated_as!
control
BIOSAMPLE
ASSAY
70 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
MeRIP-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH1
17
3
1
3
2
2
1
HepG2
1
9
5
2
2
2
1
smooth muscle cell of the coronary artery
8
EndoC-BH1
1
1
HEK293T
2
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