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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
45
ChIP-seq
13
ATAC-seq
3
Hi-C
2
DNase-seq
1
pCHi-C
Assay category
99
Transcription
45
DNA binding
15
DNA accessibility
3
3D chromatin structure
Target of assay
24
transcription factor
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
7
recombinant protein
2
RNA binding protein
Date released
93
February, 2021
23
August, 2021
20
October, 2019
14
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
517
bigWig
509
bam
400
bed narrowPeak
fastq
351
bigBed narrowPeak
105
tsv
59
bed broadPeak
59
bigBed broadPeak
17
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
163
Homo sapiens
Biosample type
1461
tissue
402
primary cell
179
in vitro differentiated cells
163
cell line
Organ
64
artery
64
blood vessel
64
heart
64
vasculature
58
pancreas
52
epithelium
17
liver
12
kidney
8
embryo
1
blood
1
bodily fluid
Project
159
AMP
4
T1D
Genome assembly (visualization)
163
hg19
143
GRCh38
Lab
148
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
60
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
inconsistent assembly
files.file_type!
fastq
BIOSAMPLE
ASSAY
163 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
DNase-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
4
8
EndoC_BH1
33
13
3
1
HepG2
14
1
1
1
H1-hESC
8
Panc1
6
1
1
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