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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
385
ChIP-seq
104
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
385
DNA binding
104
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
341
transcription factor
87
recombinant protein
57
RNA binding protein
26
histone
26
histone modification
19
chromatin remodeller
14
narrow histone mark
13
control
12
broad histone mark
2
other context
2
other post-translational modification
Date released
247
November, 2017
83
February, 2021
52
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
20
October, 2019
12
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
556
bam
496
bigWig
401
fastq
380
bed narrowPeak
331
bigBed narrowPeak
119
tsv
46
bed broadPeak
46
bigBed broadPeak
9
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
496
Homo sapiens
Biosample type
1726
tissue
608
primary cell
496
cell line
242
in vitro differentiated cells
1
stem cell
Organ
306
liver
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
55
blood
55
bodily fluid
50
epithelium
12
kidney
8
embryo
Project
492
AMP
4
T1D
Genome assembly (visualization)
491
hg19
432
GRCh38
Lab
482
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
58
inconsistent ontology term
1
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
496 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
300
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
EndoC_BH1
13
33
2
H1-hESC
8
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