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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
ChIP-seq
1
Hi-C
Assay category
105
DNA binding
1
3D chromatin structure
Target of assay
62
control
41
transcription factor
6
RNA binding protein
2
chromatin remodeller
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
1
recombinant protein
Date released
98
November, 2017
4
November, 2018
3
January, 2019
1
December, 2018
Available data
119
bam
106
fastq
68
bigWig
46
bed narrowPeak
32
bigBed narrowPeak
15
tsv
14
bed broadPeak
14
bigBed broadPeak
6
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3+
1
txt
1
vcf
Organism
106
Homo sapiens
Biosample type
180
primary cell
106
cell line
97
tissue
23
in vitro differentiated cells
1
stem cell
Organ
100
liver
6
blood
6
bodily fluid
Project
106
AMP
Genome assembly (visualization)
367
hg19
GRCh38
Lab
106
AMP-T2D consortium
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
BIOSAMPLE
ASSAY
106 results
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ChIP-seq
Hi-C
cell line
HepG2
99
1
GM12878
6
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