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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
407
ChIP-seq
5
total RNA-seq
1
Hi-C
1
WGBS
Assay category
407
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
325
transcription factor
81
recombinant protein
62
control
61
RNA binding protein
24
chromatin remodeller
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
305
November, 2017
58
November, 2018
28
December, 2018
23
January, 2019
Available data
569
bam
510
bigWig
414
fastq
392
bed narrowPeak
343
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
414
Homo sapiens
Biosample type
414
cell line
365
primary cell
351
tissue
135
in vitro differentiated cells
4
stem cell
Organ
354
liver
60
blood
60
bodily fluid
Project
414
AMP
Genome assembly (visualization)
355
hg19
316
GRCh38
Lab
414
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
missing controlled_by
Audit category:
21
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
414 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
347
5
1
1
GM12878
60
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