Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
420
ChIP-seq
113
total RNA-seq
5
pCHi-C
1
ATAC-seq
1
Hi-C
1
WGBS
Assay category
420
DNA binding
113
Transcription
1
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
337
transcription factor
82
recombinant protein
63
RNA binding protein
62
control
30
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
78
February, 2021
61
November, 2018
28
December, 2018
23
January, 2019
17
August, 2021
9
March, 2020
4
May, 2021
4
October, 2019
1
May, 2020
1
November, 2019
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
541
Homo sapiens
Biosample type
1356
tissue
553
primary cell
541
cell line
257
in vitro differentiated cells
8
stem cell
Organ
377
liver
60
blood
60
bodily fluid
52
artery
52
blood vessel
52
heart
52
vasculature
35
epithelium
34
pancreas
8
embryo
6
kidney
1
mammary gland
Project
539
AMP
2
T1D
Genome assembly (visualization)
467
hg19
420
GRCh38
Lab
532
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
541 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
Hi-C
WGBS
cell line
HepG2
360
14
1
1
1
GM12878
60
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
H1-hESC
8
+ See 8 more…
See all biosamples
Download