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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
402
ChIP-seq
26
total RNA-seq
4
ATAC-seq
3
Hi-C
2
DNase-seq
Assay category
402
DNA binding
26
Transcription
6
DNA accessibility
3
3D chromatin structure
Target of assay
347
transcription factor
85
recombinant protein
62
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
February, 2021
54
November, 2018
27
December, 2018
23
August, 2021
20
January, 2019
20
October, 2019
14
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
434
bigWig
417
bam
386
bed narrowPeak
367
fastq
351
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
27
tsv
12
tagAlign
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
hdf5
Organism
437
Homo sapiens
Biosample type
1303
tissue
625
primary cell
437
cell line
271
in vitro differentiated cells
3
stem cell
Organ
328
liver
55
blood
55
bodily fluid
32
pancreas
26
epithelium
12
kidney
8
embryo
Project
433
AMP
4
T1D
Genome assembly (visualization)
437
hg19
372
GRCh38
Lab
422
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
34
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
February, 2021
BIOSAMPLE
ASSAY
437 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
cell line
HepG2
322
5
1
GM12878
54
1
EndoC_BH1
13
7
3
1
H1-hESC
8
Panc1
6
1
1
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