Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
638
ChIP-seq
161
total RNA-seq
49
ATAC-seq
11
pCHi-C
8
Hi-C
6
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
2
HiChIP
2
single cell RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
638
DNA binding
165
Transcription
52
DNA accessibility
8
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
394
transcription factor
128
histone
128
histone modification
114
control
89
recombinant protein
71
RNA binding protein
65
broad histone mark
62
narrow histone mark
33
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
315
November, 2017
May, 2021
122
February, 2021
86
August, 2021
68
August, 2017
61
November, 2018
43
December, 2017
39
February, 2018
38
October, 2019
28
December, 2018
23
January, 2019
22
February, 2023
21
November, 2019
19
March, 2020
6
November, 2020
January, 2018
2
December, 2019
2
March, 2023
1
August, 2018
1
May, 2020
1
October, 2022
Available data
783
bam
682
bigWig
564
fastq
530
bed narrowPeak
372
bigBed narrowPeak
167
tsv
60
bed broadPeak
60
bigBed broadPeak
54
tagAlign
28
bed bed3+
9
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
4
txt
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
894
Homo sapiens
Biosample type
2735
tissue
882
primary cell
640
cell line
258
in vitro differentiated cells
9
stem cell
Organ
416
liver
96
connective tissue
77
epithelium
71
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
60
blood
60
bodily fluid
34
embryo
19
kidney
1
adipose tissue
1
mammary gland
Project
888
AMP
8
T1D
2
community
Genome assembly (visualization)
732
hg19
640
GRCh38
Lab
844
AMP-T2D consortium
34
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
118
inconsistent ontology term
2
audit script error
1
inconsistent control
1
inconsistent replicate
Audit category:
19
missing controlled_by
Audit category:
43
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
January, 2018
May, 2021
BIOSAMPLE
ASSAY
898 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
MeRIP-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
HiChIP
single cell RNA-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
2
1
1
smooth muscle cell of the coronary artery
6
52
8
EndoC_BH1
14
29
3
1
6
2
3
2
1
GM12878
60
Panc1
13
1
1
+ See 14 more…
in vitro differentiated cells
adipocyte
67
5
8
1
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
15
+ See 18 more…
See all biosamples
Download