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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
447
ChIP-seq
99
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
447
DNA binding
99
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
335
transcription factor
89
recombinant protein
73
control
58
RNA binding protein
34
histone
34
histone modification
24
chromatin remodeller
18
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
95
February, 2021
61
November, 2018
29
October, 2019
27
December, 2018
January, 2019
15
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
559
bam
502
bigWig
404
fastq
389
bed narrowPeak
340
bigBed narrowPeak
114
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
559
Homo sapiens
Biosample type
1900
tissue
609
primary cell
559
cell line
291
in vitro differentiated cells
3
stem cell
Organ
361
liver
66
artery
66
blood vessel
66
heart
66
vasculature
63
pancreas
51
epithelium
42
blood
42
bodily fluid
15
kidney
8
embryo
Project
555
AMP
4
T1D
Genome assembly (visualization)
489
hg19
443
GRCh38
Lab
559
AMP-T2D consortium
Audit category:
62
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
January, 2019
BIOSAMPLE
ASSAY
559 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
359
1
1
smooth muscle cell of the coronary artery
6
52
8
EndoC_BH1
15
33
1
GM12878
42
Panc1
13
1
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