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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
99
total RNA-seq
10
ATAC-seq
2
DNase-seq
Assay category
378
DNA binding
99
Transcription
12
DNA accessibility
Target of assay
327
transcription factor
85
recombinant protein
55
RNA binding protein
33
histone
33
histone modification
24
chromatin remodeller
17
broad histone mark
16
narrow histone mark
13
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
92
February, 2021
54
November, 2018
27
December, 2018
January, 2019
19
October, 2019
13
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
497
bigWig
489
bam
385
bed narrowPeak
347
fastq
336
bigBed narrowPeak
100
tsv
59
bed broadPeak
59
bigBed broadPeak
17
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
489
Homo sapiens
Biosample type
1642
tissue
574
primary cell
489
cell line
264
in vitro differentiated cells
3
stem cell
Organ
309
liver
64
artery
64
blood vessel
64
heart
64
vasculature
54
pancreas
49
epithelium
39
blood
39
bodily fluid
12
kidney
8
embryo
Project
485
AMP
4
T1D
Genome assembly (visualization)
489
hg19
443
GRCh38
Lab
489
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
January, 2019
BIOSAMPLE
ASSAY
489 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
cell line
HepG2
308
1
smooth muscle cell of the coronary artery
4
52
8
EndoC_BH1
13
33
1
GM12878
39
H1-hESC
8
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