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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
413
ChIP-seq
99
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
413
DNA binding
99
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
335
transcription factor
89
recombinant protein
73
control
58
RNA binding protein
histone
34
histone modification
24
chromatin remodeller
18
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
299
November, 2017
95
February, 2021
61
November, 2018
27
December, 2018
January, 2019
22
October, 2019
8
August, 2021
5
November, 2019
4
March, 2020
4
May, 2021
Available data
525
bam
466
bigWig
389
fastq
355
bed narrowPeak
321
bigBed narrowPeak
114
tsv
45
bed broadPeak
45
bigBed broadPeak
9
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
525
Homo sapiens
Biosample type
1441
tissue
525
cell line
406
primary cell
212
in vitro differentiated cells
1
stem cell
Organ
346
liver
66
artery
66
blood vessel
66
heart
66
vasculature
44
pancreas
42
blood
42
bodily fluid
39
epithelium
15
kidney
8
embryo
Project
523
AMP
2
T1D
Genome assembly (visualization)
456
hg19
412
GRCh38
Lab
525
AMP-T2D consortium
Audit category:
50
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
month_released!
January, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
525 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
344
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
42
EndoC_BH1
3
33
1
H1-hESC
8
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