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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
452
ChIP-seq
103
total RNA-seq
9
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
452
DNA binding
103
Transcription
11
DNA accessibility
1
DNA methylation
Target of assay
348
transcription factor
89
recombinant protein
74
control
63
RNA binding protein
30
chromatin remodeller
25
histone
25
histone modification
13
narrow histone mark
12
broad histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
95
February, 2021
61
November, 2018
29
October, 2019
27
December, 2018
23
January, 2019
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
567
bam
510
bigWig
427
fastq
392
bed narrowPeak
355
bigBed narrowPeak
118
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
567
Homo sapiens
Biosample type
1868
tissue
609
primary cell
567
cell line
286
in vitro differentiated cells
3
stem cell
Organ
366
liver
66
artery
66
blood vessel
66
heart
66
vasculature
60
blood
60
bodily fluid
48
pancreas
36
epithelium
15
kidney
8
embryo
Project
563
AMP
4
T1D
Genome assembly (visualization)
496
hg19
450
GRCh38
Lab
567
AMP-T2D consortium
Audit category:
47
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
November, 2019
BIOSAMPLE
ASSAY
567 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
359
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
EndoC_BH1
2
32
Panc1
13
1
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