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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
18
DNA binding
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
315
November, 2017
61
November, 2018
28
December, 2018
27
August, 2021
26
October, 2019
18
February, 2021
18
January, 2019
17
May, 2021
15
November, 2019
7
March, 2020
6
February, 2023
6
November, 2020
1
January, 2018
1
May, 2020
1
October, 2022
Available data
14
bed narrowPeak
14
bigWig
1
bedpe bed3+
1
hic
1
vcf
Organism
27
Homo sapiens
Biosample type
73
tissue
35
in vitro differentiated cells
27
cell line
4
primary cell
Organ
22
liver
2
epithelium
2
kidney
2
pancreas
Project
27
AMP
Genome assembly (visualization)
15
hg19
Lab
25
Bing Ren, UCSD
2
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_slims!
Transcription
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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