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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
total RNA-seq
26
ChIP-seq
9
ATAC-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
pCHi-C
1
whole genome sequencing assay
Assay category
95
Transcription
26
DNA binding
9
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
16
transcription factor
7
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
105
bigWig
103
bam
95
tsv
28
bed narrowPeak
8
tagAlign
1
bed bed3
1
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
140
Homo sapiens
Biosample type
774
tissue
140
cell line
68
in vitro differentiated cells
52
primary cell
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
33
liver
28
epithelium
28
pancreas
8
embryo
2
kidney
Project
140
AMP
Genome assembly (visualization)
116
hg19
100
GRCh38
Lab
106
AMP-T2D consortium
34
Bing Ren, UCSD
Audit category:
29
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
140 results
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total RNA-seq
ChIP-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
pCHi-C
whole genome sequencing assay
cell line
smooth muscle cell of the coronary artery
52
6
8
HepG2
9
18
1
2
1
1
1
EndoC_BH1
26
2
H1-hESC
8
HEK293T
2
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